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streptomyces » Streptomyces hygroscopicus subsp. jinggangensis 5008

Streptomyces hygroscopicus subsp. jinggangensis 5008

Summary

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Data source name jinggangensis
Full name Streptomyces hygroscopicus subsp. jinggangensis 5008 External
Taxonomy Lineage Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces.

Genome Information

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Chromosomes
Name Size (bp) Genes
Chromosome Chromosome 10,145,833 8,936
pSHJG1 pSHJG1 164,566 184
pSHJG2 pSHJG2 73,285 75
Total 10,383,684 9,195
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset jinggangensis

Genome-scale data

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Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 1133850 External
KEGG GENOME shy External
UniProt taxonomy:1133850 in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /streptomyces/jinggangensis/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /streptomyces/jinggangensis/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /streptomyces/jinggangensis/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /streptomyces/jinggangensis/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/streptomyces/jinggangensis/genes/word_cloud?style=plain -- Plain view in html
/streptomyces/jinggangensis/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/streptomyces/jinggangensis/genes/goterm.txt (File format)
InterProScan matches /api/streptomyces/jinggangensis/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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