Bradyrhizobium japonicum USDA 6

Summary section of USDA6.

Data source name indicates the genome project name. This name uses for a namespace of the data in varous tools.

Full name indicates the scientific name of the species. It links to the document page about the species at KazusaWiki.

Taxonomy lineage indicates the taxonomic hierarchy of the species. This data imported from the NCBI Taxonomy.

Genome section of USDA6.

Chromosomes indicates the table of the genome chromosomes or plamids.

Circle map image indicates the visual display of the chromosome/plasmid structure at a glance. It links to the MapView page.

Name indicates the name of the chromosome/plasmid. It links to the GenomeView a gbrowse page.

Size (bp) indicates the number of nucleotide length of the chromosome/plasmid..

Genes indicates the number of the genes in the chromosome/plasmid.

Total indicates the summation of the size and the genes.

Features indicates informatin about miscellaneous genomic features including repeat regions.

Genes section of USDA6.

List indicates the link to the list of the genes at GeneView page. CSV, TXT and FAA icons indicate the link to the gene list in the corresponding format: CSV, tab-delimitered text and amino-acid fasta format respectively.

Function category indicates the link to the gene function categroy at GeneCategoryView page. CSV and TXT icons indicate the link to the function category list in the corresponding format: CSV and tab-delimitered text respectively.

Annotation indicates the link to a word clouds view of the gene definition at WordCloudsView page. Annotation word clouds image indicates the visual display of the word clouds of the text of the gene definition. The image generated by the Wordle (http://www.wordle.net). You can see more detail information at the link of it.

Tools and analysis section of USDA6.

BLAST2 indicates the link to the homology search tool for genes and genome.

KazusaMart indicates the link to the KazusaMart a BioMart site at Kazusa DNA Research Institute. KazusaMart contains the data of rhizobase.

Genome scale data section of USDA6.

Curated mutant information indicates the Genes and Mutants.

Proteome indicates data from proteomics experiments.

Interactome indicates data form protein-protein interaction experiments.

Transcriptome indicates data form gene expression experiments.

Bibliome indicates data form large-scale reference curation experiments.

Bibliography section of USDA6.

References indicates the references of the genome project. It have RSS feed indicated by an icon.

Gene Indexing indicates the link to the articles related the genes of the species by a part of Kazusa Gene Indexing effort.

Resources section of USDA6.

Data download indicates the link to the ftp server to download the data.

Sequence data indicates the link to the INSDB sequence files.

Social genome annotation indicates the link to related annotaions at KazusaAnnotation.

DAS service indicates the link to a DAS server at Kazusa.

NCBI Taxonomy indicates the NCBI Taxonomy ID and the link to the entry.

KEGG GENOME indicates the KEGG genome id and the link to the entry.

UniProt indicates the link to the entry list of Bradyrhizobium japonicum USDA 6 .

API section of USDA6.