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rhizobase » M.loti R7A symbiosis island

M.loti R7A symbiosis island

Summary

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Data source name R7A
Full name M.loti R7A symbiosis island External
Taxonomy Lineage

Genome Information

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Chromosomes
Name Size (bp) Genes
Show Chromosome 501,801 414
Total 501,801 414
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-r7a

Tools and analysis

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BLAST2
KazusaMart Dataset R7A

Genome-scale data

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Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME mle External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /rhizobase/R7A/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /rhizobase/R7A/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /rhizobase/R7A/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /rhizobase/R7A/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/rhizobase/R7A/genes/word_cloud?style=plain -- Plain view in html
/rhizobase/R7A/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/rhizobase/R7A/genes/goterm.txt (File format)
InterProScan matches /api/rhizobase/R7A/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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