Sign in
rhizobase » Rhizobium sp. NGR234

Rhizobium sp. NGR234

Summary

? | +/- | Top
Data source name NGR234abc
Full name Rhizobium sp. NGR234 External
Taxonomy Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
Ngr234abc-chr-chr Chromosome 3,925,702 3,691
Ngr234abc-pngr234b-pngr234b pNGR234b 2,430,033 2,328
Ngr234abc-pngr234a-pngr234a pNGR234a 536,165 418
Total 6,891,900 6,437
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-ngr234abc

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset NGR234abc

Genome-scale data

? | +/- | Top
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 394 External
KEGG GENOME rhi External
UniProt taxonomy:394 in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /rhizobase/NGR234abc/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /rhizobase/NGR234abc/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /rhizobase/NGR234abc/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /rhizobase/NGR234abc/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/rhizobase/NGR234abc/genes/word_cloud?style=plain -- Plain view in html
/rhizobase/NGR234abc/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/rhizobase/NGR234abc/genes/goterm.txt (File format)
InterProScan matches /api/rhizobase/NGR234abc/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer