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rhizobase » Rhizobium leguminosarum bv. viciae 3841

Rhizobium leguminosarum bv. viciae 3841

Summary

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Data source name Leguminosarum
Full name Rhizobium leguminosarum bv. viciae 3841 External
Taxonomy Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium

Genome Information

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Chromosomes
Name Size (bp) Genes
Leguminosarum-chr-chr Chromosome 5,057,142 4,797
Leguminosarum-prl12-prl12 pRL12 870,021 790
Leguminosarum-prl11-prl11 pRL11 684,202 644
Leguminosarum-prl10-prl10 pRL10 488,135 470
Leguminosarum-prl9-prl9 pRL9 352,782 312
Leguminosarum-prl7-prl7 pRL7 151,564 187
Leguminosarum-prl8-prl8 pRL8 147,463 142
Total 7,751,309 7,342
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-leguminosarum

Tools and analysis

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BLAST2
KazusaMart Dataset Leguminosarum

Genome-scale data

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Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 216596 External
KEGG GENOME rle External
UniProt taxonomy:216596 in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /rhizobase/Leguminosarum/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /rhizobase/Leguminosarum/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /rhizobase/Leguminosarum/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /rhizobase/Leguminosarum/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/rhizobase/Leguminosarum/genes/word_cloud?style=plain -- Plain view in html
/rhizobase/Leguminosarum/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/rhizobase/Leguminosarum/genes/goterm.txt (File format)
InterProScan matches /api/rhizobase/Leguminosarum/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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