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cyanobase » Thermosynechococcus elongatus BP-1 » genes » tsl2052

GeneView: tsl2052

GFF3
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GeneAnnotation

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ID tsl2052
Type protein_coding_gene
Gene symbol
psbM
Gene symbolExtracted from literature
psbM
Gene product

photosystem II reaction center M protein

Gene productExtracted from literature
Functional category Photosystem II
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosynthesis, light reaction (GO:0019684 External)
  • Cellular Component: integral to membrane (GO:0016021 External)
  • Cellular Component: photosystem II (GO:0009523 External)

Genomic context

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Location Chr:2134310..2134420 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length111 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length36 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Thermo:tsl2052
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 6 27 21

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG tsl2052 External -- Phylogenetic classification of ortholog.
  • MBGD tel:tsl2052 External -- The automated construction of orthologous groups.
  • Gclust *tsl2052* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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