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cyanobase » Synechocystis sp. PCC 6803 » genes » slr1645

GeneView: slr1645

GFF3
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GeneAnnotation

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ID slr1645
Type protein_coding_gene
Gene symbol
psb27, psbZ
Gene symbolExtracted from literature
psb27, psbZ, slr1645
Gene product

photosystem II 11 kD protein

Gene productExtracted from literature
Psb27, Slr1645, Sll1194, Sll1418
Functional category Photosystem II
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:2070975..2071382 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length408 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length135 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synechocystis:slr1645
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 3 25 22

Mutants

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Protein-Protein Interaction experiments

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Sato2007

PMID:18000013

Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG slr1645 External -- Phylogenetic classification of ortholog.
  • MBGD syn:slr1645 External -- The automated construction of orthologous groups.
  • Gclust *slr1645* External -- trans-kingdom classification of proteins.
Phenotype database
  • Fluorome slr1645 External -- The Cyanobacterial Chlorophyll Fluorescence Database.

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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