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cyanobase » Synechocystis sp. PCC 6803 » genes » slr0394

GeneView: slr0394

GFF3
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GeneAnnotation

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ID slr0394
Type protein_coding_gene
Gene symbol
pgk
Gene symbolExtracted from literature
pgk, slr0394
Gene product

phosphoglycerate kinase

Gene productExtracted from literature
Pgk
Functional category Glycolysis
Gene Ontology
[IEA]
ipr2go
  • Biological Process: glycolysis (GO:0006096 External)
  • Molecular Function: phosphoglycerate kinase activity (GO:0004618 External)

Genomic context

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Location Chr:2139193..2140395 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1203 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length400 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synechocystis:slr0394
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Protein-Protein Interaction experiments

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Sato2007

PMID:18000013

Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG slr0394 External -- Phylogenetic classification of ortholog.
  • MBGD syn:slr0394 External -- The automated construction of orthologous groups.
  • Gclust *slr0394* External -- trans-kingdom classification of proteins.
Phenotype database
  • Fluorome slr0394 External -- The Cyanobacterial Chlorophyll Fluorescence Database.

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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