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cyanobase » Synechocystis sp. PCC 6803 » genes » slr0379

GeneView: slr0379

GFF3
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GeneAnnotation

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ID slr0379
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
tmk
Gene product

thymidylate kinase

Gene productExtracted from literature
Functional category Other
Gene Ontology
[IEA]
ipr2go
  • Biological Process: dTDP biosynthetic process (GO:0006233 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: thymidylate kinase activity (GO:0004798 External)

Genomic context

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Location Chr:2381041..2381751 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length711 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length236 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synechocystis:slr0379
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Protein-Protein Interaction experiments

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Sato2007

PMID:18000013

Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG slr0379 External -- Phylogenetic classification of ortholog.
  • MBGD syn:slr0379 External -- The automated construction of orthologous groups.
  • Gclust *slr0379* External -- trans-kingdom classification of proteins.
Phenotype database
  • Fluorome slr0379 External -- The Cyanobacterial Chlorophyll Fluorescence Database.

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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