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cyanobase » Synechococcus sp. PCC 7002 » genes » SYNPCC7002_A0996

GeneView: SYNPCC7002_A0996

GFF3
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GeneAnnotation

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ID SYNPCC7002_A0996
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

two-component hybrid sensor kinase and response regulator with PAS and HAMP domains

Gene productExtracted from literature
Functional category Regulatory functions
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: phosphorylation (GO:0016310 External)
  • Biological Process: regulation of transcription, DNA-dependent (GO:0006355 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160 External)
  • Cellular Component: integral to membrane (GO:0016021 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: signal transducer activity (GO:0004871 External)
  • Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772 External)
  • Molecular Function: two-component response regulator activity (GO:0000156 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:1021969..1025811 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length3843 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length1280 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synpcc7002:synpcc7002_a0996
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 19 41 22
51 73 22
84 105 21
124 146 22
156 177 21
189 211 22
472 494 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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