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cyanobase » Synechococcus sp. CC9902 » genes » Syncc9902_0082

GeneView: Syncc9902_0082

GFF3
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GeneAnnotation

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ID Syncc9902_0082
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

possible photosystem II protein PsbZ (ycf9)

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosystem II stabilization (GO:0042549 External)
  • Cellular Component: photosystem II reaction center (GO:0009539 External)

Genomic context

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Location Chr:82312..82500 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length189 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length62 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Syncc9902:syncc9902_0082
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 5 27 22
39 61 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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