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cyanobase » Rhodopseudomonas palustris CGA009 » genes » RPA3792

GeneView: RPA3792

GFF3
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GeneAnnotation

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ID RPA3792
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

putative Sensory Transduction histidine Kinase/Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)

Gene productExtracted from literature
Functional category Signal Transduction Mechanisms
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:4290117..4291256 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1140 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length379 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Rhodopseudomonas:rpa3792
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 32 51 19
57 78 21
87 109 22
114 136 22
138 160 22
163 182 19

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG RPA3792 External -- Phylogenetic classification of ortholog.
  • MBGD rpa:RPA3792 External -- The automated construction of orthologous groups.
  • Gclust *RPA3792* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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