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cyanobase » Cyanothece sp. PCC 7424

Cyanothece sp. PCC 7424

Summary

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Data source name PCC7424
Full name Cyanothece sp. PCC 7424 External
Taxonomy Lineage Bacteria; Cyanobacteria; Chroococcales; Cyanothece

Genome Information

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Chromosomes
Name Size (bp) Genes
Pcc7424-chr-chr Chromosome 5,942,652 5,280
Pcc7424-pp742401-pp742401 pP742401 328,635 236
Pcc7424-pp742402-pp742402 pP742402 197,705 175
Pcc7424-pp742403-pp742403 pP742403 29,239 26
Pcc7424-pp742404-pp742404 pP742404 22,636 19
Pcc7424-pp742405-pp742405 pP742405 18,083 16
Pcc7424-pp742406-pp742406 pP742406 15,219 11
Total 6,554,169 5,763
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-pcc7424

Tools and analysis

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BLAST2
KazusaMart Dataset PCC7424

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 65393 External
KEGG GENOME cyc External
UniProt taxonomy:65393 in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/PCC7424/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/PCC7424/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/PCC7424/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/PCC7424/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/PCC7424/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/PCC7424/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/PCC7424/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/PCC7424/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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