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cyanobase » Synechococcus elongatus PCC 6301 » genes » syc2436_d

GeneView: syc2436_d

GFF3
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GeneAnnotation

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ID syc2436_d
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

phosphorylase kinase alpha subunit

Gene productExtracted from literature
Functional category Cobalamin, heme, phycobilin and porphyrin
Gene Ontology
[IEA]
ipr2go
  • Biological Process: glycogen metabolic process (GO:0005977 External)
  • Biological Process: polysaccharide metabolic process (GO:0005976 External)
  • Molecular Function: calmodulin binding (GO:0005516 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: glucan 1,4-alpha-glucosidase activity (GO:0004339 External)

Genomic context

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Location Chr:2596103..2599342 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length3240 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length1079 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Pcc6301:syc2436_d
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG syc2436_d External -- Phylogenetic classification of ortholog.
  • MBGD syc:syc2436_d External -- The automated construction of orthologous groups.
  • Gclust *syc2436_d* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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