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cyanobase » Prochlorococcus marinus str. MIT 9301

Prochlorococcus marinus str. MIT 9301

Summary

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Data source name P9301
Full name Prochlorococcus marinus str. MIT 9301 External
Taxonomy Lineage Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus

Genome Information

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Chromosomes
Name Size (bp) Genes
P9301-chr-chr Chromosome 1,641,879 1,949
Total 1,641,879 1,949
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-p9301

Tools and analysis

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BLAST2
KazusaMart Dataset P9301

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 167546 External
KEGG GENOME pmg External
UniProt taxonomy:167546 in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/P9301/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/P9301/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/P9301/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/P9301/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/P9301/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/P9301/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/P9301/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/P9301/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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