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cyanobase » Chlorobium tepidum TLS » genes » CT2232

GeneView: CT2232

GFF3
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GeneAnnotation

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ID CT2232
Type protein_coding_gene
Gene symbol
pckA
Gene symbolExtracted from literature
Gene product

phosphoenolpyruvate carboxykinase

Gene productExtracted from literature
Functional category Glycolysis/gluconeogenesis
Gene Ontology
[IEA]
ipr2go
  • Biological Process: gluconeogenesis (GO:0006094 External)
  • Molecular Function: GTP binding (GO:0005525 External)
  • Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611 External)
  • Molecular Function: purine nucleotide binding (GO:0017076 External)

Genomic context

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Location Chr:2095005..2096870 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1866 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length621 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Chlorobium:ct2232
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop ctep0:CT2232 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG CT2232 External -- Phylogenetic classification of ortholog.
  • MBGD cte:CT2232 External -- The automated construction of orthologous groups.
  • Gclust *CT2232* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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