Sign in
cyanobase » Cyanothece sp. PCC 7425 » genes » Cyan7425_3549

GeneView: Cyan7425_3549

GFF3
Sign in

GeneAnnotation

? | +/- | Top
ID Cyan7425_3549
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

undecaprenol kinase

Gene productExtracted from literature
Functional category Defense mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: dephosphorylation (GO:0016311 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: undecaprenyl-diphosphatase activity (GO:0050380 External)

Genomic context

? | +/- | Top
Location Chr:3495912..3496721 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length810 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length269 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Cyan7425:cyan7425_3549
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 10 32 22
43 65 22
86 108 22
110 132 22
179 200 21
211 233 22
242 264 22

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

Licence and disclaimer