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cyanobase » Synechococcus sp. JA-3-3Ab » genes » CYA_2217

GeneView: CYA_2217

GFF3
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GeneAnnotation

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ID CYA_2217
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

sensor histidine kinase

Gene productExtracted from literature
Functional category Signal transduction mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160 External)
  • Cellular Component: integral to membrane (GO:0016021 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein dimerization activity (GO:0046983 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:2231060..2233144 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length2085 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length694 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Cya:cya_2217
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 27 49 22
363 385 22
400 422 22
428 450 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG CYA_2217 External -- Phylogenetic classification of ortholog.
  • MBGD cya:CYA_2217 External -- The automated construction of orthologous groups.
  • Gclust *CYA_2217* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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