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cyanobase » Cyanothece sp. ATCC 51142 » genes » cce_1317

GeneView: cce_1317

GFF3
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GeneAnnotation

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ID cce_1317
Type protein_coding_gene
Gene symbol
ispE
Gene symbolExtracted from literature
Gene product

4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: phosphorylation (GO:0016310 External)
  • Biological Process: terpenoid biosynthetic process (GO:0016114 External)
  • Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: kinase activity (GO:0016301 External)

Genomic context

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Location Chr:1315947..1316957 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1011 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length336 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Cce:cce_1317
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 12 34 22
130 152 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :cce_1317 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG cce_1317 External -- Phylogenetic classification of ortholog.
  • MBGD cyt:cce_1317 External -- The automated construction of orthologous groups.
  • Gclust *cce_1317* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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