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cyanobase » Synechococcus sp. CC9311 » genes » sync_2557

GeneView: sync_2557

GFF3
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GeneAnnotation

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ID sync_2557
Type protein_coding_gene
Gene symbol
aroK
Gene symbolExtracted from literature
Gene product

shikimate kinase

Gene productExtracted from literature
Functional category Aromatic amino acid family
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:2242815..2243453 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length639 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length212 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Cc9311:sync_2557
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG sync_2557 External -- Phylogenetic classification of ortholog.
  • MBGD syg:sync_2557 External -- The automated construction of orthologous groups.
  • Gclust *sync_2557* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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