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cyanobase » Anabaena variabilis ATCC 29413 » genes » Ava_4928

GeneView: Ava_4928

GFF3
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GeneAnnotation

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ID Ava_4928
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

Multi-sensor Hybrid Histidine Kinase

Gene productExtracted from literature
Functional category Signal transduction mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: phosphorylation (GO:0016310 External)
  • Biological Process: regulation of transcription, DNA-dependent (GO:0006355 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: signal transducer activity (GO:0004871 External)
  • Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772 External)
  • Molecular Function: two-component response regulator activity (GO:0000156 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:6196882..6199551 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length2670 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length889 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ava:ava_4928
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 13 35 22
51 73 22
79 100 21
122 144 22
159 181 22
204 226 22
256 278 22
295 317 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG Ava_4928 External -- Phylogenetic classification of ortholog.
  • MBGD ava:Ava_4928 External -- The automated construction of orthologous groups.
  • Gclust *Ava_4928* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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