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cyanobase » Anabaena variabilis ATCC 29413 » genes » Ava_4807

GeneView: Ava_4807

GFF3
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GeneAnnotation

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ID Ava_4807
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

Multi-sensor Hybrid Histidine Kinase

Gene productExtracted from literature
Functional category Signal transduction mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: phosphorylation (GO:0016310 External)
  • Biological Process: regulation of transcription, DNA-dependent (GO:0006355 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: signal transducer activity (GO:0004871 External)
  • Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772 External)
  • Molecular Function: two-component response regulator activity (GO:0000156 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:6037533..6041396 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length3864 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length1287 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ava:ava_4807
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 21 43 22
56 77 21
94 116 22
134 156 22
165 187 22
206 228 22
242 264 22
273 295 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG Ava_4807 External -- Phylogenetic classification of ortholog.
  • MBGD ava:Ava_4807 External -- The automated construction of orthologous groups.
  • Gclust *Ava_4807* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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