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cyanobase » Anabaena variabilis ATCC 29413 » genes » Ava_3850

GeneView: Ava_3850

GFF3
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GeneAnnotation

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ID Ava_3850
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

Periplasmic Sensor Signal Transduction Histidine Kinase

Gene productExtracted from literature
Functional category Signal transduction mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: phosphorylation (GO:0016310 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: signal transducer activity (GO:0004871 External)
  • Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:4792438..4793553 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1116 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length371 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Ava:ava_3850
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 11 32 21
56 78 22
85 107 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG Ava_3850 External -- Phylogenetic classification of ortholog.
  • MBGD ava:Ava_3850 External -- The automated construction of orthologous groups.
  • Gclust *Ava_3850* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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