Sign in
cyanobase » Anabaena variabilis ATCC 29413 » genes » Ava_0553

GeneView: Ava_0553

GFF3
Sign in

GeneAnnotation

? | +/- | Top
ID Ava_0553
Type protein_coding_gene
Gene symbol
aroK
Gene symbolExtracted from literature
Gene product

shikimate kinase

Gene productExtracted from literature
Functional category Amino acid transport and metabolism
Gene Ontology
[IEA]
ipr2go

Genomic context

? | +/- | Top
Location Chr:698769..699314 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length546 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length181 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Ava:ava_0553
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG Ava_0553 External -- Phylogenetic classification of ortholog.
  • MBGD ava:Ava_0553 External -- The automated construction of orthologous groups.
  • Gclust *Ava_0553* External -- trans-kingdom classification of proteins.
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

Licence and disclaimer