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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_B0197

GeneView: AM1_B0197

GFF3
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GeneAnnotation

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ID AM1_B0197
Type protein_coding_gene
Gene symbol
udk
Gene symbolExtracted from literature
Gene product

uridine kinase

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773 External)

Genomic context

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Location pREB2:147335..147937 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length603 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length200 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_b0197
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_B0197 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_B0197 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_B0197 External -- The automated construction of orthologous groups.
  • Gclust *AM1_B0197* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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