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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_A0181

GeneView: AM1_A0181

GFF3
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GeneAnnotation

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ID AM1_A0181
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

major facilitator family protein

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: transmembrane transport (GO:0055085 External)

Genomic context

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Location pREB1:163069..164331 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1263 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length420 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_a0181
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 6 28 22
38 60 22
68 90 22
100 122 22
154 176 22
216 238 22
248 270 22
286 308 22
396 418 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_A0181 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_A0181 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_A0181 External -- The automated construction of orthologous groups.
  • Gclust *AM1_A0181* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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