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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_3655

GeneView: AM1_3655

GFF3
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GeneAnnotation

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ID AM1_3655
Type protein_coding_gene
Gene symbol
hli
Gene symbolExtracted from literature
Gene product

high light inducible protein

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosynthesis, light reaction (GO:0019684 External)
  • Biological Process: photosynthetic electron transport chain (GO:0009767 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Cellular Component: photosystem (GO:0009521 External)
  • Molecular Function: chlorophyll binding (GO:0016168 External)

Genomic context

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Location Chr:3711622..3712683 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1062 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length353 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_3655
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 44 66 22
82 104 22
109 131 22
158 180 22
194 215 21
232 253 21
284 306 22
321 343 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_3655 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_3655 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_3655 External -- The automated construction of orthologous groups.
  • Gclust *AM1_3655* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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