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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_3654

GeneView: AM1_3654

GFF3
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GeneAnnotation

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ID AM1_3654
Type protein_coding_gene
Gene symbol
hli
Gene symbolExtracted from literature
Gene product

high light inducible protein

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosynthesis, light reaction (GO:0019684 External)
  • Biological Process: photosynthetic electron transport chain (GO:0009767 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Cellular Component: photosystem (GO:0009521 External)
  • Molecular Function: chlorophyll binding (GO:0016168 External)

Genomic context

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Location Chr:3710290..3711348 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1059 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length352 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_3654
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 26 48 22
96 118 22
143 165 22
209 231 22
251 273 22
305 327 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_3654 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_3654 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_3654 External -- The automated construction of orthologous groups.
  • Gclust *AM1_3654* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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