Sign in
cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_2391

GeneView: AM1_2391

GFF3
Sign in

GeneAnnotation

? | +/- | Top
ID AM1_2391
Type protein_coding_gene
Gene symbol
phkA
Gene symbolExtracted from literature
Gene product

phosphorylase kinase alpha

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: glycogen metabolic process (GO:0005977 External)
  • Biological Process: polysaccharide metabolic process (GO:0005976 External)
  • Molecular Function: calmodulin binding (GO:0005516 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: glucan 1,4-alpha-glucosidase activity (GO:0004339 External)

Genomic context

? | +/- | Top
Location Chr:2395920..2399132 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length3213 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length1070 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Am1:am1_2391
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 1049 1070 21

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_2391 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_2391 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_2391 External -- The automated construction of orthologous groups.
  • Gclust *AM1_2391* External -- trans-kingdom classification of proteins.
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

Licence and disclaimer