Sign in
cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_2334

GeneView: AM1_2334

GFF3
Sign in

GeneAnnotation

? | +/- | Top
ID AM1_2334
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

conserved hypothetical membrane protein

Gene productExtracted from literature
Functional category Defense mechanisms
Gene Ontology
[IEA]
ipr2go

Genomic context

? | +/- | Top
Location Chr:2337494..2339050 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length1557 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length518 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Am1:am1_2334
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 27 49 22
56 78 22
110 132 22
145 167 22
181 202 21
249 271 22
284 305 21
320 342 22
362 384 22
400 422 22
439 461 22
477 499 22

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_2334 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_2334 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_2334 External -- The automated construction of orthologous groups.
  • Gclust *AM1_2334* External -- trans-kingdom classification of proteins.
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

Licence and disclaimer