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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_2302

GeneView: AM1_2302

GFF3
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GeneAnnotation

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ID AM1_2302
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

integral membrane protein MviN-like protein

Gene productExtracted from literature
Functional category General function prediction only
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:2301247..2302830 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1584 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length527 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_2302
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 11 33 22
54 76 22
95 117 22
137 159 22
163 185 22
192 214 22
238 260 22
274 296 22
316 338 22
347 369 22
386 408 22
411 433 22
449 471 22
484 506 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_2302 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_2302 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_2302 External -- The automated construction of orthologous groups.
  • Gclust *AM1_2302* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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