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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_1083

GeneView: AM1_1083

GFF3
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GeneAnnotation

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ID AM1_1083
Type protein_coding_gene
Gene symbol
psbD
Gene symbolExtracted from literature
Gene product

photosystem II D2 protein PsbD

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosynthesis, light reaction (GO:0019684 External)
  • Biological Process: photosynthetic electron transport in photosystem II (GO:0009772 External)
  • Cellular Component: light-harvesting complex (GO:0030076 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Cellular Component: plasma membrane light-harvesting complex (GO:0030077 External)
  • Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156 External)

Genomic context

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Location Chr:1050536..1051591 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1056 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length351 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_1083
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 25 47 22
142 164 22
193 215 22
268 290 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_1083 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_1083 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_1083 External -- The automated construction of orthologous groups.
  • Gclust *AM1_1083* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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