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cyanobase » Acaryochloris marina MBIC11017 » genes » AM1_0516

GeneView: AM1_0516

GFF3
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GeneAnnotation

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ID AM1_0516
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

two-component sensor histidine kinase

Gene productExtracted from literature
Functional category Signal transduction mechanisms
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidyl-histidine phosphorylation (GO:0018106 External)
  • Biological Process: signal transduction (GO:0007165 External)
  • Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160 External)
  • Cellular Component: integral to membrane (GO:0016021 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: protein dimerization activity (GO:0046983 External)
  • Molecular Function: protein histidine kinase activity (GO:0004673 External)
  • Molecular Function: two-component sensor activity (GO:0000155 External)

Genomic context

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Location Chr:489385..490653 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1269 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length422 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Am1:am1_0516
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 8 30 22
49 71 22
78 98 20
100 121 21
123 144 21
173 195 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AM1_0516 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AM1_0516 External -- Phylogenetic classification of ortholog.
  • MBGD amr:AM1_0516 External -- The automated construction of orthologous groups.
  • Gclust *AM1_0516* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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